www.bioinf.org.uk : Dr. Andrew C.R. Martin's Group
Our main server is now up and running again!
Please email us if there are any problems.
Download the complete mapping from the PDB to UniProt entries:
16.02.11: Note the files are now supplied gzipped as the uncompressed residue level mapping had now reached 1.7G (gzipped it is <15% of that size).
Columns in the chain mapping are:
Columns in the residue mapping are:
You may also access the mapping directly from your scripts. [Instructions]
You may download a draft manuscript now
published in Bioinformatics. If you use PDBSWS, please cite the
Martin, Andrew C. R. (2005) Mapping PDB chains to UniProtKB entries, Bioinformatics, 21:4297-4301
The data were last updated on
22 Mar 2017 (Corrected download dataset from 27 Nov 2016 - queryable data unchanged)
The residue mapping download file was missing some entries. This resulted from some software not running properly on a new server.